common-workflow-language / common-workflow-language/cwltool

CWL Tool Output and Error Capturing Behaviour

Open
#1,750 3 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
376
Forks
255
Avg merge
2d 7h
Merged PRs (30d)
12

Description

When running cwltool with workflows with long outputs, one might want to capture the outputs of individual steps into files. The main issue with specifying this with explicit outputs of stderr and stdout is that when workflows fail, the output files are lost.

## Your Environment
* cwltool version: 3.1.20221008225030

Contributor guide

Open the contributing guide

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.