common-workflow-language / common-workflow-language/cwltool
CWLProv: missing information in run with nested workflow
- Dominant language
- Python
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- Avg merge
- 2d 7h
- Merged PRs (30d)
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Description
I ran [this workflow](https://github.com/ResearchObject/workflow-run-crate/tree/eab5f652670299b0a5493c3ab4fbf80a891d227d/tools/cwlprov_to_crate/revsortlcase) with `--provenance`, creating [this RO](https://github.com/ResearchObject/workflow-run-crate/tree/eab5f652670299b0a5493c3ab4fbf80a891d227d/tools/cwlprov_to_crate/test/data/revsortlcase-run-1).
There are two problems with the provenance:
1. There is no trace of the `revsort_in` parameter.
2. The `reverse_sort` parameter is reported as having a value of `False`, while it was actually set to `True`. The corresponding upstream (`descending_sort` in the main workflow) and downstream (`reverse` in `revtool.cwl`) parameters are correctly reported as `True`.
The RO was generated with cwltool 3.1.20220628170238, but I've verified that the issue is also present in the current version (3.1.20220913185150).
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