common-workflow-language / common-workflow-language/cwltool

Update the singularity command line parameter for apptainer

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Description

Placeholder issue for future work after Singularity has moved to under the Linux Foundation as “Apptainer”.

From @mr-c on Element about renaming `--singularity` to `--apptainer` in `cwltool`:

>Sure, but we'll likely keep the other name as a fallback.
>Or better yet, auto detect which engine is installed. I believe there is an issue for that already

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