common-workflow-language / common-workflow-language/cwltool

document troubleshooting techniques

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#1,434 3 comments 1 reaction 0 assignees View on GitHub
enhancement help wanted
Dominant language
Python
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2d 7h
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Description

## Expected Behavior
When a permanentFail occurs, stdout/stderr outputs should be preserved.

## Actual Behavior
When a permanentFail occurs, stdout/stderr outputs are not preserved.

## Working example

An example that illustrates this problem is described here: https://cwl.discourse.group/t/forcing-stdout-and-stderr-to-be-written-when-a-tool-fails/342

If it would be helpful, I can copy the details here from there.

## My Environment
* cwltool version:
3.0.20201203182617 (Mac OS)

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