common-workflow-language / common-workflow-language/cwltool
cwltool does not recognize equivalent types
- Dominant language
- Python
- Stars
- 376
- Forks
- 255
- Avg merge
- 2d 7h
- Merged PRs (30d)
- 12
Description
`../types/singletype.yml`
```
name: simple_record
type: record
fields:
prop: string
```
`../tools/clt2.cwl`
```
#!/usr/bin/env cwl-runner
# Inline schemadef
class: CommandLineTool
cwlVersion: v1.0
requirements:
SchemaDefRequirement:
types:
- name: user_type1
type: record
fields:
- name: prop
type: string
inputs:
in1: user_type1
outputs:
out1:
type: user_type1
outputBinding:
outputEval: $(inputs.in1)
baseCommand: []
arguments: []
```
`../workflows/wf1.cwl`
```
class: Workflow
cwlVersion: v1.0
inputs:
in1: ../types/singletype.yml#simple_record
steps:
s1:
run: ../tools/clt2.cwl
in:
in1: in1
out: [out1]
outputs:
out1:
type: user_type1
outputSource: s1/out1
requirements:
SchemaDefRequirement:
types:
- $import: ../types/singletype.yml
- name: user_type1
type: record
fields:
- name: prop
type: string
```
`cwltool --validate` claims all of these are different types, when in fact they are identical.
Contributor guide
Assessment
This issue has not been assessed yet.