common-workflow-language / common-workflow-language/cwltool

Detect when Singularity isn't properly configured to mount local folders

Open
#1,144 15 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
376
Forks
255
Avg merge
2d 7h
Merged PRs (30d)
12

Description

I am trying to define a `CommandLineTool` which is either available via a docker container (pulled from our private repository) or directly from a Singularity image file on the local machine or from an SFTP server but could not find out how to do it.
In the docs I found a hint that Singularity is supported but could not find a field to describe it.

What I want to do is running the tool inside a Docker container OR using a Singularity image with a given path.

Can anyone point me into the right direction?

Contributor guide

Open the contributing guide

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.