clij / clij/clijpy

Maven error

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Description

Hey Robert,

Wanted to try out the new CLIJ2 python interface and test its performance. I was working through your install guide, and the demo.py routine. When I execute it in anaconda I get the following error for both my local FIJI install, as well as the one that automatically downloads the most recent JAR file.

(pyimagej) C:\Users\MicroscopyInnovation\Desktop\Python\gpuProcessing>python gpuProcessing.py
Error in `C:\Users\MicroscopyInnovation\Anaconda3\envs\pyimagej\Library\bin\mvn.CMD -B -f C:\Users\MicroscopyInnovation\.jgo\net.imagej\imagej\RELEASE+net.imglib2-imglib2-imglyb-0.4.0\pom.xml dependency:resolve': 1

I've had problems with Maven communicating through a proxy in the past, which which I've been able to fix by modifying the pom.xml file as follows: https://maven.apache.org/guides/mini/guide-proxies.html

When I tried my luck at adding a proxy to the pom file (...\imagej\RELEASE+net.imglib2-imglib2-imglyb-0.4.0\pom.xml), it didn't work. Looks like this file is recreated every time I run the file...

Thanks,
Kevin

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Research direction

Start with the install guide and demo.py, then reproduce the failure by running gpuProcessing.py in the Anaconda environment. Inspect the generated pom.xml under the .jgo ImageJ directory and the Maven dependency:resolve command. Done means dependency resolution works through a proxy for both the local and automatically downloaded FIJI setups.

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Assessment

Tech stack
python
Domain
build-system
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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