chaoss / chaoss/CollectOSS

Database initialization (via alembic) assumes a user called "augur" is present

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database
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Description

> [!NOTE]
> Migrated from [augurlabs/augur#3417](https://github.com/augurlabs/augur/issues/3417)
> Originally opened by `@MoralCode` on 2025-11-18

---

A colleague is trying to set up augur in docker as a test and set the username to something other than augur

This caused the migration process to fail at step 2:

```
INFO [alembic.runtime.migration] Context impl PostgresqlImpl.
INFO [alembic.runtime.migration] Will assume transactional DDL.
INFO [alembic.runtime.migration] Running upgrade -> 0, Goodbye, .sql migrations
INFO [alembic.runtime.migration] New database, will run all legacy migrations
INFO [alembic.runtime.migration] Running legacy migration 80.1-create-schema.sql
INFO [alembic.runtime.migration] Running legacy migration 80.2-create-tables.sql
Traceback (most recent call last):
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
psycopg2.errors.UndefinedObject: role "augur" does not exist

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "/augur/.venv/bin/alembic", line 10, in
sys.exit(main())
^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/alembic/config.py", line 590, in main
CommandLine(prog=prog).main(argv=argv)
File "/augur/.venv/lib/python3.11/site-packages/alembic/config.py", line 584, in main
self.run_cmd(cfg, options)
File "/augur/.venv/lib/python3.11/site-packages/alembic/config.py", line 561, in run_cmd
fn(
File "/augur/.venv/lib/python3.11/site-packages/alembic/command.py", line 322, in upgrade
script.run_env()
File "/augur/.venv/lib/python3.11/site-packages/alembic/script/base.py", line 569, in run_env
util.load_python_file(self.dir, "env.py")
File "/augur/.venv/lib/python3.11/site-packages/alembic/util/pyfiles.py", line 94, in load_python_file
module = load_module_py(module_id, path)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/alembic/util/pyfiles.py", line 110, in load_module_py
spec.loader.exec_module(module) # type: ignore
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "", line 940, in exec_module
File "", line 241, in _call_with_frames_removed
File "/augur/augur/application/schema/alembic/env.py", line 90, in
run_migrations_online()
File "/augur/augur/application/schema/alembic/env.py", line 84, in run_migrations_online
context.run_migrations()
File "", line 8, in run_migrations
File "/augur/.venv/lib/python3.11/site-packages/alembic/runtime/environment.py", line 853, in run_migrations
self.get_context().run_migrations(**kw)
File "/augur/.venv/lib/python3.11/site-packages/alembic/runtime/migration.py", line 623, in run_migrations
step.migration_fn(**kw)
File "/augur/augur/application/schema/alembic/versions/0_legacy.py", line 68, in upgrade
op.execute(legacy_migration_file.read())
File "", line 8, in execute
File "", line 3, in execute
File "/augur/.venv/lib/python3.11/site-packages/alembic/operations/ops.py", line 2414, in execute
return operations.invoke(op)
^^^^^^^^^^^^^^^^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/alembic/operations/base.py", line 399, in invoke
return fn(self, operation)
^^^^^^^^^^^^^^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/alembic/operations/toimpl.py", line 207, in execute_sql
operations.migration_context.impl.execute(
File "/augur/.venv/lib/python3.11/site-packages/alembic/ddl/impl.py", line 202, in execute
self._exec(sql, execution_options)
File "/augur/.venv/lib/python3.11/site-packages/alembic/ddl/impl.py", line 195, in _exec
return conn.execute(construct, multiparams)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1416, in execute
return meth(
^^^^^
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/sql/elements.py", line 516, in _execute_on_connection
return connection._execute_clauseelement(
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1639, in _execute_clauseelement
ret = self._execute_context(
^^^^^^^^^^^^^^^^^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1848, in _execute_context
return self._exec_single_context(
^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1988, in _exec_single_context
self._handle_dbapi_exception(
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 2343, in _handle_dbapi_exception
raise sqlalchemy_exception.with_traceback(exc_info[2]) from e
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/base.py", line 1969, in _exec_single_context
self.dialect.do_execute(
File "/augur/.venv/lib/python3.11/site-packages/sqlalchemy/engine/default.py", line 922, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.ProgrammingError: (psycopg2.errors.UndefinedObject) role "augur" does not exist

[SQL: /*
Navicat Premium Data Transfer

Source Server : linda
Source Server Type : PostgreSQL
Source Server Version : 120008
Source Host : 192.168.0.95:5432
Source Catalog : test
Source Schema : augur_data

Target Server Type : PostgreSQL
Target Server Version : 120008
File Encoding : 65001

Date: 09/10/2021 14:14:17
*/

-- ----------------------------
-- Sequence structure for augur_data.repo_insights_ri_id_seq
-- ----------------------------
DROP SEQUENCE IF EXISTS "augur_data"."augur_data.repo_insights_ri_id_seq";
CREATE SEQUENCE "augur_data"."augur_data.repo_insights_ri_id_seq"
INCREMENT 1
MINVALUE 1
MAXVALUE 9223372036854775807
START 25430
CACHE 1;
ALTER SEQUENCE "augur_data"."augur_data.repo_insights_ri_id_seq" OWNER TO "augur";

[omitted the entire rest of the augur initial schema sql file - you are welcome]
```

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