Collate outputs in Kive
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
Currently, the Micall Watcher collates the output files, but that means that Kive won't recognize the checksums of those collated outputs. Kive should support pipelines with an arbitrary number of inputs, so write a pipeline to collate the files, and use it.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing how the Micall Watcher currently collates output files and how Kive represents pipelines with inputs. Define the pipeline entry point and verify that Kive recognizes checksums for every collated output while supporting an arbitrary number of inputs; the issue names no files or tests to run.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 32/100