Recombinant HIV references
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
We currently exclude all the recombinant references, so should we change that? Here's the current logic for pulling the HIV reference sequences out of the HIV Sequence Database Compendium:
https://github.com/cfe-lab/MiCall/blob/v7.11.1/micall/utils/fetch_sequences.py#L50-L57
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing micall/utils/fetch_sequences.py at lines 50-57 and the HIV Sequence Database Compendium references it uses. Clarify whether recombinant references should be included and what selection criteria and expected results would define the change; the issue currently names no tests or concrete target behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100