Separate HCV 1A from other subtypes
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- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
Currently, we split genotype 1 into 1A and 1B, where all other subtypes are reported as 1A. Chanson asked that we split them into 1A, 1B, and 1. 1A and 1 will have the same resistance interpretations, but physicians will treat them differently.
I suggest we configure a list of genotypes for each rule set, so we don't have to create duplicate rules for 1A and 1.
Do this after validating against the current HCV reports, because they only report 1A and 1B.
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Research direction
Start by validating the current HCV reports, since they only report 1A and 1B. Then inspect the genotype and rule-set configuration entry points to determine how 1A, 1B, and 1 are represented. Done means the three genotypes are reported distinctly, 1A and 1 share resistance interpretations without duplicate rules, and existing reports remain valid.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100