Choose samples for HLA validation
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enhancement
- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
The HLA assay needs to be validated. Lab work has been done for that:
- retest old samples that were tested on the 3730
- test the same sample several times in several runs
- test the same sample several times in a single run
The task is to find out who did the lab work, record which samples were involved, and choose a set that we want to use for the validation.
This can wait until #274 is done, because that will help us decide on how we want to validate the process.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing issue #274, since this task depends on its validation approach, then identify who performed the listed lab work and which samples were used. Done means the lab-work provenance is recorded and a validation sample set has been chosen.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, testing-qa
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 25/100