Upgrade to bowtie2 2.2.5
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
While installing on Windows for issue #234, I found that versions 2.2.3 and earlier seem to require some libraries from the MinGW C compiler. Version 2.2.5 doesn't have the problem, so maybe we should test the new version of bowtie2 and upgrade all our deployments to use it.
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the deployment configuration and installation references for bowtie2, then check how the Windows setup described in issue #234 uses versions 2.2.3 and earlier. Done means testing bowtie2 2.2.5 and updating all deployments so the MinGW library problem is no longer present.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100