cfe-lab / cfe-lab/MiCall

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enhancement
Dominant language
Python
Stars
21
Forks
11
Avg merge
12h 5m
Merged PRs (30d)
24

Description

We often get asked if a run has started processing, so it would be helpful to show clearly on the QAI micall page whether the run has started processing or not. Possible states:

  • no data - needsprocessing file not present
  • waiting for quality control - qc_uploaded file not present
  • waiting to process - started file not present (we'll have to change the monitor to create this when it starts processing a run)
  • processing - started file is present, but doneprocessing and errorprocessing are not
  • errors - errorprocessing file is present
  • done - doneprocessing file is present

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by tracing the QAI MiCall page and the monitor responsible for the named needsprocessing, qc_uploaded, started, doneprocessing, and errorprocessing files. Implement the listed status states, ensure the monitor creates started when processing begins, and verify that each file combination displays the expected status.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, web-dev
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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