cfe-lab / cfe-lab/MiCall

Display QC data while run is being processed

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bug micall
Dominant language
Python
Stars
21
Forks
11
Avg merge
12h 5m
Merged PRs (30d)
24

Description

For new runs, the QC data gets uploaded, then the run starts processing, processing takes a few hours, and then the results are uploaded.

While the run is processing, the Micall page will not display the QC data. Even worse, going to another run and coming back will display the QC data from the other run.

Workaround: go to the QC data of another run, then edit the date in the URL.

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Reproduce the workflow in the Micall page: open a new run while processing, view its QC data, navigate to another run, and return. Trace how the page selects and retains QC data, then verify that the current run's data is shown during processing and that another run's data is never displayed; the issue names no files or tests.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, web-dev
Issue type
Bug
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
38/100

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