Disable/do not consider HCV
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question
- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
Hi guys,
Is it possible to disable analysis of HCV even if it is present?
This is how I am running the pipeline:
micall folder --project_code HIVB --skip trim.censor -s
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at the micall folder CLI entry point and trace how --skip trim.censor affects pipeline stages. Determine where HCV analysis is selected and define completion as allowing HCV analysis to be disabled while the requested HIV pipeline continues without it.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100