Micall breaks when a sample has no target regions
Open
Nobody has claimed this yet.
bug
micall
- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
Sometimes, the lab_miseq_sequencing table isn't loaded properly, and a sample doesn't have any target regions. It causes a Javascript exception, because the targetRegions array is undefined.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the case where the lab_miseq_sequencing table is not loaded and a sample has no target regions. Trace the JavaScript exception involving the undefined targetRegions array; done means this input no longer raises an exception and is handled correctly.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- javascript, python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100