Display failed alignments and failed reads on the micall page
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enhancement
- Dominant language
- Python
- Stars
- 21
- Forks
- 11
- Avg merge
- 12h 5m
- Merged PRs (30d)
- 24
Description
Maybe failed reads should show up as another count in the upper table: raw, mapped, unmapped, failed.
Failed alignments can show up below the coverage map when you click on a region.
The failed alignments are reported in failed_alignment.csv, as described in #102.
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the MiCall page and the handling of failed_alignment.csv described in issue #102. Trace how the upper counts and coverage-map region selection are assembled. Done means failed reads appear in the raw, mapped, unmapped, failed summary and failed alignments appear below the coverage map for a selected region.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100