cellcanvas / cellcanvas/cellcanvas-prototype
Use CellCanvas with multiple tomograms
- Dominant language
- Python
- Stars
- 12
- Forks
- 5
- PR merge metrics
- No merged PRs in 30d
Description
There are 2 aspects of this, one is easier than the other:
1) Train a model on multiple tomograms
2) Apply a model to multiple tomograms
(2) is kinda addressed by things like https://github.com/cellcanvas/cellcanvas/issues/9#issuecomment-1973339045
However, (1) has some design/UI challenges because we currently are fairly tightly linked to just working on 1 tomogram at a time. Flagging @kandarpksk @Janeece
Both were requested by David Agard
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by reviewing the current single-tomogram workflow and the linked CellCanvas issue comment about applying a model to multiple tomograms. Clarify the UI and design requirements for both training on multiple tomograms and applying a model to them. Done means both requested workflows are supported without being limited to one tomogram at a time.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- machine-learning
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100