cellcanvas / cellcanvas/cellcanvas-prototype

Use CellCanvas with multiple tomograms

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Dominant language
Python
Stars
12
Forks
5
PR merge metrics
No merged PRs in 30d

Description

There are 2 aspects of this, one is easier than the other:

1) Train a model on multiple tomograms
2) Apply a model to multiple tomograms

(2) is kinda addressed by things like https://github.com/cellcanvas/cellcanvas/issues/9#issuecomment-1973339045

However, (1) has some design/UI challenges because we currently are fairly tightly linked to just working on 1 tomogram at a time. Flagging @kandarpksk @Janeece

Both were requested by David Agard

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by reviewing the current single-tomogram workflow and the linked CellCanvas issue comment about applying a model to multiple tomograms. Clarify the UI and design requirements for both training on multiple tomograms and applying a model to them. Done means both requested workflows are supported without being limited to one tomogram at a time.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
20/100

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