ccpem / ccpem/empiarreader

Improve API tools for file-searching

Open
#67 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
14
Forks
4
PR merge metrics
No merged PRs in 30d

Description

test_entry = 10311

test_catalog = EmpiarCatalog(test_entry)

entry_data = test_catalog.fetch_entry_data(test_entry)

entry_data["imagesets"]

gives me an overview of the available datasets. entry_data["imagesets"][i]["directory"] gives me the location of these datasets. But I don’t know how to check the contents of this directory (except by checking the EMPIAR entry manually!).

There is entry_data["imagesets"][i]["data_format"]) which tells me if it is MRC or TIFF. Although it wouldn’t tell me if the files are .tif or .tiff

This is related to the absence (or non-accessibility) of mapping metadata file when API written. Check if that is now public. If not might be able to adapt CLI functionality for use by API.

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.