cancervariants / cancervariants/variation-normalization
Improve free text query performance
Open
performance
priority:high
- Dominant language
- Python
- Stars
- 15
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
Specifically looking at protein free text queries (E.g. BRAF V600E) for the manuscript analysis. I ran for ~420s locally and could only normalize ~3 free text queries per second. I tried making some work in the [draft PR](https://github.com/GenomicMedLab/cool-seq-tool/pull/172) in cool-seq-tool, but tests weren't passing (BRAF V600E and BRAF V512E did not return the same concept).
Contributor guide
No contributing guide indexed for this repository
Assessment
This issue has not been assessed yet.