cancervariants / cancervariants/therapy-normalization

Handle chemidplus deprecation

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bug ChemIDplus
Dominant language
Python
Stars
15
Forks
3
PR merge metrics
No merged PRs in 30d

Description

https://www.nlm.nih.gov/pubs/techbull/ja22/ja22_pubchem.html

Time to get cracking on #209 ?

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reading issue #209 and the linked NLM notice about ChemIDplus deprecation. Locate the repository entry points that depend on ChemIDplus, then define the replacement or removal path and verify that therapy normalization no longer relies on the deprecated service.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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