cancervariants / cancervariants/therapy-normalization
New source: PubChem
Open
new-source
- Dominant language
- Python
- Stars
- 15
- Forks
- 3
- PR merge metrics
- No merged PRs in 30d
Description
From analysis of concept normalization performance for DGIdb purposes, addition of PubChem will normalize an additional 7540 GtP / US pID concepts and bring us up to ~88% normalization for DGIdb.
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by locating the existing source integrations and the normalization entry point, then inspect how source identifiers and concept mappings are represented. Use the PubChem source and the DGIdb analysis described in the issue as the scope; done means the source is integrated and the reported normalization coverage can be reproduced.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100