bytedance / bytedance/Protenix
pLDDT color for Ligands
- Dominant language
- Python
- Stars
- 2.1k
- Forks
- 310
- PR merge metrics
- No merged PRs in 30d
Description
Hi,
It seems that the pLDDT value doesn't match pLDDT colorbar for ligands. There is only one pLDDT value for the whole ligand, while there is one pLDDT for each residue. What's the way that protenix calculates pLDDT for ligands ?
Contributor guide
Research direction
The issue names no files, tests, or entry points. Locate the pLDDT calculation for ligands and the code that assigns residue colors, then compare their aggregation and confirm that the displayed value matches the colorbar semantics.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics, machine-learning
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100