Issue with stereochemistry

Hello,

I am performing docking experiments with various sugars (glucose, galactose and mannose) using the web server. I see inversion of the stereochemistry, which I do not see with other docking tools (Chai-1, diffdock). As such, I was wondering if there is a way to set up protenix to avoid this inversion. I do not have a computational background and may just be unaware of how to properly configure protenix.

Thanks!

The issue names no files or tests; start by reproducing the web-server run with glucose, galactose, and mannose, then compare the resulting stereochemistry with the reported behavior. Done means determining whether a supported Protenix configuration prevents the inversion, or documenting the limitation and required setup.

Written by the indexing model from the issue text.