biopython / biopython/biopython
Enhancement: PyPanda for gene network analysis
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- Python
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Description
http://dx.doi.org/10.1371/journal.pone.0064832
PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data.
PANDA was first released in C++ but now we've created a python implementation of the PANDA algorithm that is both faster than the C++ version (because we now use matrix operations) and has more features.
https://github.com/davidvi/pypanda
Would you be interested in adding pypanda to biopython? I would be willing to maintain the code.
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