biocore / biocore/mmvec

Raise error when passing in wrong files

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Dominant language
Python
Stars
133
Forks
54
PR merge metrics
No merged PRs in 30d

Description

There are 2 issues that have the same error

https://github.com/biocore/mmvec/issues/103
https://github.com/knightlab-analyses/multiomic-cooccurrences/issues/13

This issue happens because there are no iterations that happen, either due to misspecified batch size or wrong input files. We'll need to have an error message raised for this.

Contributor guide

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Research direction

Start by reproducing the no-iteration cases described in issues #103 and #13, including misspecified batch sizes and wrong input files. Trace the execution path that completes without iterations and identify where the error should be raised. Done means invalid inputs or configurations no longer finish silently and instead produce an actionable error message.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
machine-learning
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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