biocore / biocore/microsetta-public-api
Include information on unique / rare taxa
Open
- Dominant language
- Python
- Stars
- 2
- Forks
- 4
- PR merge metrics
- No merged PRs in 30d
Description
Either reproduce or harvest from here:
https://github.com/biocore/American-Gut/blob/master/americangut/taxtree.py
In the past, we used a rare threshold of .1% of samples.
Contributor guide
No contributing guide indexed for this repository
Research direction
Start by reading the linked americangut/taxtree.py implementation and then locate the microsetta-public-api entry point that returns taxa information. Confirm how unique or rare taxa should be represented and use the stated 0.1% of samples threshold; done means the API includes this information consistently.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- api, backend
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100