biocore / biocore/microsetta-public-api
new endpoint returning a sample's features matching collapsed taxonomy for empress
- Dominant language
- Python
- Stars
- 2
- Forks
- 4
- PR merge metrics
- No merged PRs in 30d
Description
The biom table representation of features, and the features implied by the `empress` endpoint in #96 do not match, since the tree in that endpoint is collapsed.
In order support things like highlighting an indivdual's features on an empress visualization, we need a way to query a sample for features that are also collapsed.
Contributor guide
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Research direction
Start by reading the empress endpoint described in issue #96 and the biom table representation of features. Determine how the collapsed taxonomy changes the feature set for a sample, then define the new endpoint so it returns features matching that collapsed representation. Done means a sample's collapsed features can be queried for highlighting in an empress visualization.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- api, backend, data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100