Is it possible to use the data without a biom as input
Open
enhancement
- Dominant language
- Python
- Stars
- 92
- Forks
- 20
- PR merge metrics
- No merged PRs in 30d
Description
For the python input it would be great if a simple pandas table or numpy array could be used as input.
Contributor guide
No contributing guide indexed for this repository
Research direction
No files or tests are named. Start by locating the Python input handling and the current BIOM-loading entry points, then trace how data reaches the analysis routines. Done means a simple pandas table or NumPy array can be accepted as input, with coverage for the supported input paths.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- numpy, pandas, python
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100