biocore / biocore/gemelli

Installing the standalone version without qiime2

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Dominant language
Python
Stars
92
Forks
20
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Description

Hello Cameron, I am trying to use CTF on some analysis and I am trying to install it on a fresh python3 environment without qiime2. I used the `pip install gemelli` command, however, the installation was halted due to some errors, which appeared to be attributed missing packages, `numpy` and `cython`. After manually installing these two packages (use the qiime2 channel), the installation went through. Perhaps, you could check why numpy and cython were not automatically downloaded and installed? Thanks! -Jincheng

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Research direction

Start by reproducing `pip install gemelli` in a fresh Python 3 environment without qiime2, then inspect the package dependency metadata that controls installation. The issue is done when numpy and cython are installed automatically and the standalone installation completes without manually using the qiime2 channel.

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Assessment

Tech stack
python
Domain
build-system
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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