Installing the standalone version without qiime2
- Dominant language
- Python
- Stars
- 92
- Forks
- 20
- PR merge metrics
- No merged PRs in 30d
Description
Hello Cameron, I am trying to use CTF on some analysis and I am trying to install it on a fresh python3 environment without qiime2. I used the `pip install gemelli` command, however, the installation was halted due to some errors, which appeared to be attributed missing packages, `numpy` and `cython`. After manually installing these two packages (use the qiime2 channel), the installation went through. Perhaps, you could check why numpy and cython were not automatically downloaded and installed? Thanks! -Jincheng
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Research direction
Start by reproducing `pip install gemelli` in a fresh Python 3 environment without qiime2, then inspect the package dependency metadata that controls installation. The issue is done when numpy and cython are installed automatically and the standalone installation completes without manually using the qiime2 channel.
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Assessment
- Tech stack
- python
- Domain
- build-system
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100