biocore / biocore/gemelli

Output feature distance matrix in addition to sample distance matrix

Open
#44 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
92
Forks
20
PR merge metrics
No merged PRs in 30d

Description

I have a branch for this on [DEICODE](https://github.com/gibsramen/DEICODE/tree/feature_mat) but it would be nice to have in gemelli as well. Useful for me when working on CoRASCON and probably others as well.

Contributor guide

No contributing guide indexed for this repository

Research direction

Start by reviewing the linked DEICODE feature_mat branch and then locate gemelli's existing sample distance matrix output path. Determine how to emit a corresponding feature distance matrix as well, and verify that both outputs are produced for the relevant analysis.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
data
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.