Using a hierarchy over sample-ids in an Empire plot
Nobody has claimed this yet.
- Dominant language
- JavaScript
- Stars
- 56
- Forks
- 32
- PR merge metrics
- No merged PRs in 30d
Description
We have a usecase where we have a tree structure that relates samples together, and it would be nice to use this within an Empire plot. The general usecase with Empire plots is a tree with tips that correspond to feature-ids, whereas in this instance, the tips of tree correspond to sample-ids.
Is it possible to use the empire plots right now for this situation?
(sorry if this is a replicate issue, I didn't see it when looking though)
cc @zoechallacombe
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No files, tests, or entry points are named. Start by reviewing how Empire plots currently associate tree tips with feature-ids, then determine whether sample-id tips are supported; done would mean a defined approach for using the sample hierarchy in an Empire plot.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- javascript
- Domain
- data-visualization
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100