Add better validation for `https://biocomputeobject.org/api/objects/validate`

Validating the following object only returns "Bad request. BCO is not formatted correctly."

More detail should be included.

```JSON
{
"bco_id": "https://scihive.fda.gov/dna.cgi?cmdr=propget&ids=843918&mode=json",
"bco_spec_version": "1.3",
"provenance_domain": {
"name": "test",
"version": "1.0.1",
"review": [
{
"date": "2/20/2024",
"reviewer": {
"name": "hadley",
"contribution": [
"createdBy"
]
},
"status": "unreviewed"
}
],
"derived_from": "https://scihive.fda.gov/dna.cgi?cmdr=propget&mode=json&ids=undefined",
"embargo": {
},
"created": "",
"modified": "",
"contributors": [
{
"name": "hadley",
"contribution": [
"createdBy"
]
}
],
"license": "mit"
},
"usability_domain": [
"some stuff"
],
"description_domain": {
"keywords": [
"no it is not"
],
"xref": [
{
"namespace": "not required",
"name": "not required",
"ids": [
"not required"
],
"access_time": "2/8/2024"
}
],
"platform": [
"HIVE"
],
"pipeline_steps": [
{
"step_number": 1,
"name": "Screen Short Read Against Genome",
"description": "Random pick sequences to run alignment with specific genome",
"input_list": [
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=637703"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=637702"
}
],
"output_list": [
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843914&filename=dna-alignx_screenResult.csv"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843914&filename=dna-alignx_screenShannon.csv"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843914&filename=dna-alignx_acclist.csv"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843914&filename=coverage_dict"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843914&filename=_.progress.json"
}
]
},
{
"step_number": 2,
"name": "HIVE-Hexagon",
"description": "HIVE hexagon alignment engine optimized for HIVE cloud performance on Next Generation data",
"input_list": [
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=20607"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=637703"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=637702"
}
],
"output_list": [
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=coverage_dict"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=alignment.hiveal"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=histogram.csv"
},
{
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=_.progress.json"
}
]
}
]
},
"execution_domain": {
"script": [
{
"uri": {
"uri": ""
}
}
],
"script_driver": "",
"software_prerequisites": [
{
"name": "",
"version": "",
"uri": {
"uri": ""
}
}
],
"external_data_endpoints": [
{
"name": "HIVE",
"url": "https://scihive.fda.gov/dna.cgi?cmd=login"
}
],
"environment_variables": {
}
},
"parametric_domain": [
{
"param": "_type",
"value": "svc-dna-screening",
"step": "1"
},
{
"param": "name",
"value": "Patient_205_R1_fastq",
"step": "1"
},
{
"param": "CensusIterations",
"value": "1",
"step": "1"
},
{
"param": "CensuslimitIterations",
"value": "50",
"step": "1"
},
{
"param": "chunk_size",
"value": "4000",
"step": "1"
},
{
"param": "cutOffvalue",
"value": "0.0005",
"step": "1"
},
{
"param": "filterNs",
"value": "true",
"step": "1"
},
{
"param": "random_seed",
"value": "0",
"step": "1"
},
{
"param": "Sample",
"value": "10",
"step": "1"
},
{
"param": "slice",
"value": "0",
"step": "1"
},
{
"param": "alignSelector",
"value": "svc-align-blast",
"step": "1"
},
{
"param": "automanual",
"value": "0",
"step": "1"
},
{
"param": "taxDepth",
"value": "species",
"step": "1"
},
{
"param": "subject",
"value": "653801",
"step": "1"
},
{
"param": "resultInQueryDir",
"value": "0",
"step": "1"
},
{
"param": "selfStopping",
"value": "true",
"step": "1"
},
{
"param": "storeAlignments",
"value": "false",
"step": "1"
},
{
"param": "blastparams",
"value": "{\"blastWordSize\":28,\"blastMegablast\":true,\"blastevalue\":0.000001}",
"step": "1"
},
{
"param": "censusScope_otherInput",
"value": "{\"textBasedColumn\":0,\"textBasedFileSeparator\":1}",
"step": "1"
},
{
"param": "_type",
"value": "svc-align-hexagon",
"step": "2"
},
{
"param": "name",
"value": "Patient_205_R1_fastq versus Human_Genome_Chromosmes_v19_Build37_3.fa",
"step": "2"
},
{
"param": "alignmentEngine",
"value": "0",
"step": "2"
},
{
"param": "alignParam",
"value": "{\"allowShorterEnds\":0,\"costGapNext\":-4,\"costGapOpen\":-12,\"costMatch\":5,\"costMismatch\":-4,\"costMismatchNext\":-6,\"isglobal\":0,\"seed\":14}",
"step": "2"
},
{
"param": "basicAlgParam",
"value": "{\"searchRepeatsAndTrans\":0}",
"step": "2"
},
{
"param": "complexity",
"value": "{\"complexityQry\":{\"11.0.0\":{\"complexityEntropy\":0,\"complexityWindow\":0,\"maximumPercentLowQualityAllowed\":0}},\"complexityRef\":{\"11.1.0\":{\"complexityRefEntropy\":0,\"complexityRefWindow\":0,\"acceptNNNQuaTrheshold\":0}}}",
"step": "2"
},
{
"param": "minMatch",
"value": "{\"12.0\":{\"minMatchLen\":75,\"minMatchUnit\":0}}",
"step": "2"
},
{
"param": "mismatches",
"value": "{\"13.0\":{\"maxMissQueryPercent\":3,\"considerGoodSubalignments\":1}}",
"step": "2"
},
{
"param": "computeDiagonalWidth",
"value": "auto",
"step": "2"
},
{
"param": "doubleHash",
"value": "false",
"step": "2"
},
{
"param": "doubleStagePerfect",
"value": "1",
"step": "2"
},
{
"param": "hashCompileStp",
"value": "2",
"step": "2"
},
{
"param": "hashStp",
"value": "auto",
"step": "2"
},
{
"param": "isbackward",
"value": "1",
"step": "2"
},
{
"param": "isextendtails",
"value": "0",
"step": "2"
},
{
"param": "isoptimize",
"value": "1",
"step": "2"
},
{
"param": "keepAllMatches",
"value": "0",
"step": "2"
},
{
"param": "looseExtenderMinimumLengthPercent",
"value": "66",
"step": "2"
},
{
"param": "looseExtenderMismatchesPercent",
"value": "15",
"step": "2"
},
{
"param": "maxExtensionGaps",
"value": "0",
"step": "2"
},
{
"param": "maxHashBin",
"value": "50",
"step": "2"
},
{
"param": "maxHitsPerRead",
"value": "50",
"step": "2"
},
{
"param": "maxNumberQuery",
"value": "all",
"step": "2"
},
{
"param": "random_seed",
"value": "0",
"step": "2"
},
{
"param": "readconflicts",
"value": "{\"resolveConfictsUnique\":false}",
"step": "2"
},
{
"param": "reverseEngine",
"value": "0",
"step": "2"
},
{
"param": "scoreFilter",
"value": "None",
"step": "2"
},
{
"param": "selfQueryPosJumpInNonPerfectAlignment",
"value": "1",
"step": "2"
},
{
"param": "trimLowScoreEnds",
"value": "{\"44.0\":{\"trimLowScoreEndsWindow\":0}}",
"step": "2"
},
{
"param": "useRedundSim",
"value": "1",
"step": "2"
},
{
"param": "alignSelector",
"value": "622206",
"step": "2"
},
{
"param": "force_reindex",
"value": "false",
"step": "2"
}
],
"io_domain": {
"input_subdomain": [
{
"uri": {
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=637703"
}
},
{
"uri": {
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=637702"
}
}
],
"output_subdomain": [
{
"mediatype": "application/octet-stream",
"uri": {
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=coverage_dict"
}
},
{
"mediatype": "application/octet-stream",
"uri": {
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=alignment.hiveal"
}
},
{
"mediatype": "application/octet-stream",
"uri": {
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=histogram.csv"
}
},
{
"mediatype": "application/octet-stream",
"uri": {
"uri": "https://scihive.fda.gov/dna.cgi?cmd=objFile&ids=843915&filename=_.progress.json"
}
}
]
},
"error_domain": {
"algorithmic_error": {
"text": "v"
},
"empirical_error": {
"text": "not required"
}
},
"checksum": "079470722b296d2ad3bb880f46c444cb72eb8741"
}```