Add test profile for Scout with PXD042173
- Dominant language
- Nextflow
- Stars
- 0
- Forks
- 2
- PR merge metrics
- No merged PRs in 30d
Description
## Summary
Create a 2-file SDRF subset from PXD042173 (DSSO crosslinked recombinant standards) for benchmarking both xiSEARCH and Scout paths.
## Test scenarios
1. `--search_engine xisearch` with SDRF input -> xiFDR -> mzIdentML
2. `--search_engine scout` with SDRF input -> Scout FDR -> mzIdentML
3. Compare results between engines
## Files
- L1_20210727_MxR_FDR_firstbatch_DSSOplate2_B12.raw
- L1_20210727_MxR_FDR_firstbatch_DSSOplate2_E12.raw
Contributor guide
Research direction
Start with the two listed RAW files and trace how SDRF input is passed through the xiSEARCH → xiFDR and Scout FDR paths. Check the existing test-profile setup and compare the resulting mzIdentML outputs; done means both scenarios run successfully on the two-file subset and their results can be compared.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics, testing
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100