bigbio / bigbio/proteomics-sample-metadata
Suggestions to SDRF v1.1.0
- Dominant language
- HTML
- Stars
- 116
- Forks
- 116
- PR merge metrics
- No merged PRs in 30d
Description
I really like the addition of subdomain-specific templates! Feedback on what I think would be still great to have in SDRF 1.1.0:
* Allow multiple —templates separated by , e.g. immunopeptidomics,dda-ms-proteomics to validate against
* Add functionality that generates an header-only tsv file based on the `--template` flag that the user can fill
* Data-dependent acquisition (DDA) Template addition request (optional columns):
* comment[precursor mass tolerance]
* comment[fragment mass tolerance]
* comment[digest mass range]
* comment[prec charge]
@ypriverol @timosachsenberg
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Research direction
Start by tracing the existing --template entry point and template validation flow. Determine how multiple templates, header-only TSV generation, and the requested optional DDA columns fit the current SDRF templates; done means each requested behavior is supported and covered by the project's existing checks.
Written by the indexing model from the issue text.
Assessment
- Domain
- cli, data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100