Header of the proteins for search engines
- Dominant language
- Python
- Stars
- 17
- Forks
- 14
- PR merge metrics
- No merged PRs in 30d
Description
@husensofteng the header of the proteins should be modified to be understood by SEARCH engines. SearchGUI don't understand the ENSEMBL ids. We probably need to move to the following header (
https://github.com/compomics/searchgui/wiki/DatabaseHelp#non-standard-fasta):
```
>generic[your tag]|[protein accession]|[protein description]
or
>generic[your tag]|[protein accession]
```
Note that `[your tag]` can be empty.
Examples:
```
>generic_contig-535081|AC:123132|Hypothetical protein
>generic|AC:123132|Hypothetical protein
>generic|AC:123132
```
Contributor guide
No contributing guide indexed for this repository
Research direction
No file or test is named. Locate the code that generates protein FASTA headers, then compare its output with the SearchGUI non-standard FASTA examples linked in the issue; done means generated headers follow the requested generic|accession|description or generic|accession format.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100