bigbio / bigbio/ibaqpy

Caclulate iBAQ from standalone DIA-NN run

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Description

Hi,
is it possible to use this package to calculate iBAQ values from the output of standalone DIA-NN 2.0+ ?
I guess I should first parse the DIA-NN output with "quantmsio_cli convert-diann" and then feed it to ibaqpy but the steps and inputs needed are a bit confusing.

Thank you for your effort and help.

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Research direction

Start by tracing the standalone DIA-NN 2.0+ output through the mentioned quantmsio_cli convert-diann command and then into ibaqpy, checking the package's existing input expectations. Document the required inputs and complete command sequence; done means a newcomer can reproduce iBAQ calculation from a standalone DIA-NN run.

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Assessment

Domain
bioinformatics
Issue type
Documentation
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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