Get each job in pipeline working inside of Batch environment

- Ensure that each container image is publish to a central container repository
- Define the parameters necessary for each job and encode them in the job definition
- Test each to determine necessary resource requirements

No files, tests, or entry points are named. Start by mapping the pipeline jobs and their current container-image workflow, then identify how job definitions are represented for the Batch environment. Done means each image is published centrally, each job has encoded parameters, and resource requirements have been tested.

Written by the indexing model from the issue text.