automl / automl/RNAformer

Request for Training Script for RNAFormer

Open
#10 0 comments 0 reactions 0 assignees View on GitHub
Dominant language
Python
Stars
43
Forks
10
PR merge metrics
No merged PRs in 30d

Description

Hello,

Thank you for sharing RNAformer and providing an excellent inference script. I was able to successfully run the inference using the provided script. However, I would also like to train (and not just finetune) the model using custom training data or one of the datasets mentioned in the README.

Could you very kindly provide:
1. A training script for RNAFormer, ideally using one of the datasets listed in the repository (e.g., the bprna datasets)?
and/or
3. Any guidelines, examples, or helpful hints on how to set up and execute the training process?

This would be immensely helpful for experimenting with the model for my use case.

Thank you in advance for your support!

Contributor guide

No contributing guide indexed for this repository

Research direction

Start with the existing inference script and the README, especially its references to the bprna datasets. Determine how training data and execution are currently expected to be configured, then provide a runnable training example or script covering custom data or a listed dataset. Done means the repository includes clear training guidance and an example that can be followed successfully.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
bioinformatics, machine-learning
Issue type
Feature
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.