Atom Editor's Script package can't find libraries installed by pipenv

I use the Script package to run codes in Atom editor. Recently I started using pipenv to create virtual environments. I can easily run the code in terminal by typing
`pipenv shell python3 name_of_the_script_file.py `
but when I try the Script package, it doesn't recognize the virtual environment.
I tried adding `pipenv shell` in the "Run options" dialogue boxes but I still get errors although I'm already in the virtual environment's directory.
here is a simple code:
```
from bs4 import BeautifulSoup
import requests

with open('simple.html', 'r') as html_file:
soup=BeautifulSoup(html_file, 'lxml')

print(type(soup))
```
output from Script

output from terminal

Start by reproducing the example in the Atom Script package, using its Run options and the shown `pipenv shell python3 name_of_the_script_file.py` command for comparison. Check behavior with `simple.html` and the listed BeautifulSoup and requests imports; done means the package runs the script with libraries installed in the pipenv environment.

Written by the indexing model from the issue text.