Add all optional kwargs of BaseQuery to the modules

E.g. at least `cache` and `timeout`. It will help to easier debug sporadic serverside issues users run into but we cannot reproduce, see e.g. #1232

Start by reading BaseQuery and reviewing how its optional kwargs are passed through the query modules. Use #1232 as the motivating case, then identify the affected modules and verify that options such as cache and timeout can be supplied consistently wherever BaseQuery is used.

Written by the indexing model from the issue text.