Reduce number of positional arguments

`pylint 1.0.3` started reporting that the package has an unusual number of positional arguments in some of the methods ([CI logs](https://github.com/astronomy-commons/lsdb/actions/runs/11132890320/job/30937761516#step:5:329) for reference). We should try passing them as keyword arguments whenever possible, and reduce the number of positional arguments set in the source and test `.pylintrc`.

Start with the linked CI pylint output, then inspect the package source and the source and test .pylintrc files to identify the reported positional-argument cases. Done means using keyword arguments where appropriate and lowering the configured positional-argument limit without introducing new lint failures.

Written by the indexing model from the issue text.