[Bug]: dependency on root //:node_modules breaks transitive deps

### What happened?

See https://github.com/macourteau/aspect-tsproject-imports/tree/f008b8da3f4a5ad0e51a11da150f9171e58bf072

Run `bazel run //demo/web/apps/my-web-app`. The transitive deps of `express` are not available even though the full root `node_modules` is present in the runfiles. Removing [this extra dep](https://github.com/macourteau/aspect-tsproject-imports/blob/f008b8da3f4a5ad0e51a11da150f9171e58bf072/demo/web/apps/my-web-app/BUILD.bazel#L29) fixes it?

### Version

bazel: 6.3.1
rules_js: 1.31.0
rules_ts: 1.4.5

Start with demo/web/apps/my-web-app/BUILD.bazel and reproduce the issue using `bazel run //demo/web/apps/my-web-app` at the referenced commit. Compare the runfiles and transitive dependencies of `express` with and without the extra dependency on the root `//:node_modules`; done means the transitive dependencies are available in the failing configuration.

Written by the indexing model from the issue text.