add config option for supporting reads cutoff
- Dominant language
- R
- Stars
- 10
- Forks
- 9
- PR merge metrics
- No merged PRs in 30d
Description
currently, the number 10 is used [here](https://github.com/aryarm/as_analysis/blob/afe62624e004742210f951ad3910893b55805b74/scripts/prepare_counts-rna.r#L57) and [here](https://github.com/aryarm/as_analysis/blob/afe62624e004742210f951ad3910893b55805b74/scripts/prepare_counts.r#L62)
but it might be nice to allow the user to choose
Contributor guide
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Research direction
Start with scripts/prepare_counts-rna.r at line 57 and scripts/prepare_counts.r at line 62, then inspect the pipeline's existing configuration entry points. Trace how the current cutoff of 10 is used in both scripts. Done means users can choose the supporting-reads cutoff through the established configuration mechanism and both scripts honor that value.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- r
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 55/100