aryarm / aryarm/as_analysis

LD_LIBRARY_PATH problems

Open
#49 2 comments 0 reactions 1 assignee Claimed by @aryarm View on GitHub
bug
Dominant language
R
Stars
10
Forks
9
PR merge metrics
No merged PRs in 30d

Description

We try to automatically install WASP for those who don't have it, but
1. The conda envs must have LD_LIBRARY_PATH set inside them. Otherwise, snp2h5 won't work
2. Also, if the user is manually installing dependencies, you shouldn't assume that their HDF5 libraries are in the conda directory (or indeed, that conda even exists on their machine). Instead, specify this as an optional config option.

Contributor guide

No contributing guide indexed for this repository

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.