ArgoCD Application Stuck in OutOfSync When Deploying Multiple CRDs

Checklist:

* [x] I've searched in the docs and FAQ for my answer: https://bit.ly/argocd-faq.
* [x] I've included steps to reproduce the bug.
* [x] I've pasted the output of `argocd version`.

**Describe the bug**

When an `Application` includes multiple CRDs to deploy (in my case, 3 or more), the Application gets stuck in the `OutOfSync` state, even though the CRDs are deployed successfully.
It seems like ArgoCD doesn't recognize that these resources have been deployed correctly until you manually refresh/sync.
In our case, we use push-based deployment, so we have to synchronize it manually. Otherwise, the issue resolves itself after 3 minutes when ArgoCD performs another sync.

**To Reproduce**

Create a local kind cluster
```bash
kind create cluster --name "argocd-demo" --image "kindest/node:v1.29.8"
```

Install ArgoCD with default values
```bash
helm repo add argo https://argoproj.github.io/argo-helm
helm repo update
helm upgrade --install argocd argo/argo-cd \
--version "7.7.2" \
--namespace argocd \
--create-namespace \
--set configs.params."server\.insecure"=true \
--set global.logging.level="debug" \
--set global.image.tag="v2.13.0"
```

Deploy this application. This application deploy six cert-managers CRDs (cert-manager is not the problem, we have the same problem with linkerd). This application has been simplified as much as posible.
```yaml
---
apiVersion: argoproj.io/v1alpha1
kind: Application
metadata:
name: 'cert-manager-crds'
namespace: argocd
spec:
project: default
source:
repoURL: https://github.com/hlastras/test-argocd-crds.git
targetRevision: HEAD
path: services/cert-manager/multi-file # same problem if I add all crds on a single file
destination:
server: https://kubernetes.default.svc
syncPolicy:
automated: {}
syncOptions:
- ServerSideApply=true
```

**Expected behavior**

If all the CRDs are deployed successfully, the `Application` should be flagged as `Healthy` and `Synced`.

**Screenshots**

BUT

**Version**

I've tested this with ArgoCD versions `1.13.0` and `1.12.1`, both installed using Helm.
When I installed it using the command:
`kubectl apply -n argocd -f https://raw.githubusercontent.com/argoproj/argo-cd/v2.13.0/manifests/install.yaml`
the behavior remained the same (application stuck on OutOfSync). However, in this case in addition I received a warning about a resource on two applications.

**Logs**

application-controller logs in debug mode (deleted extra-large logs that contain the full CRD text):
```
2024/12/05 17:50:31 maxprocs: Leaving GOMAXPROCS=6: CPU quota undefined
time="2024-12-05T17:50:31Z" level=info msg="ArgoCD Application Controller is starting" built="2024-11-04T12:09:06Z" commit=347f221adba5599ef4d5f12ee572b2c17d01db4d namespace=argocd version=v2.13.0+347f221
time="2024-12-05T17:50:31Z" level=info msg="Processing all cluster shards"
time="2024-12-05T17:50:31Z" level=debug msg="Processing clusters from shard 0: Using filter function: legacy"
time="2024-12-05T17:50:31Z" level=info msg="Processing all cluster shards"
time="2024-12-05T17:50:31Z" level=info msg="appResyncPeriod=3m0s, appHardResyncPeriod=0s, appResyncJitter=0s"
time="2024-12-05T17:50:31Z" level=info msg="Starting configmap/secret informers"
time="2024-12-05T17:50:31Z" level=info msg="Configmap/secret informer synced"
time="2024-12-05T17:50:31Z" level=warning msg="The cluster https://kubernetes.default.svc has no assigned shard."
time="2024-12-05T17:50:31Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:50:31Z" level=info msg="Cluster https://kubernetes.default.svc has been assigned to shard 0"
time="2024-12-05T17:50:31Z" level=info msg="Start watch clusters"
time="2024-12-05T17:50:31Z" level=debug msg="Skipping sharding distribution update. Cluster already added"
time="2024-12-05T17:50:31Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:50:31Z" level=debug msg="Checking if cache &{0x4001184660 0x4000226790 0x2246db0 0x4001184420 0x4000708480 0x40003c3570 0x40007f1c20 0x7d2a060 {0} map] {{map[apiextensions.k8s.io/CustomResourceDefinition:{ false {[/status /spec/preserveUnknownFields] ] ]} {] ] ]} ]}] 0x40011d2900} argocd.argoproj.io/instance label map[*/*:{ false {[/metadata/resourceVersion /metadata/generation /metadata/managedFields] ] ]} {] ] ]} ]} apiextensions.k8s.io/CustomResourceDefinition:{ false {] ] ]} {] ] ]} ]}] false} {{0 0} 0 0 {{} 0} {{} 0}}} / cluster &Cluster{Server:https://kubernetes.default.svc,Name:in-cluster,Config:ClusterConfig{Username:,Password:,BearerToken:,TLSClientConfig:TLSClientConfig{Insecure:false,ServerName:,CertData:nil,KeyData:nil,CAData:nil,},AWSAuthConfig:nil,ExecProviderConfig:nil,},ConnectionState:ConnectionState{Status:Successful,Message:,ModifiedAt:2024-12-05 17:50:31.488342159 +0000 UTC m=+0.165670061,},ServerVersion:1.29,Namespaces:],RefreshRequestedAt:,Info:ClusterInfo{ConnectionState:ConnectionState{Status:,Message:,ModifiedAt:,},ServerVersion:,CacheInfo:ClusterCacheInfo{ResourcesCount:0,APIsCount:0,LastCacheSyncTime:,},ApplicationsCount:0,APIVersions:],},Shard:nil,ClusterResources:false,Project:,Labels:map[string]string{},Annotations:map[string]string{},} has appInformer &{0x40007ee0f0 0x40013180b0 0x40007f1e00 {} 0x40007ee0d8 0x4000d22c08 180000000000 180000000000 0x7d2a060 true false {0 0} {0 0} }"
time="2024-12-05T17:50:31Z" level=info msg="Starting secretInformer forcluster"
time="2024-12-05T17:50:31Z" level=info msg="0x40002ce690 subscribed to settings updates"
time="2024-12-05T17:50:31Z" level=debug msg="Successfully saved info of 1 clusters"
time="2024-12-05T17:50:41Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:50:41Z" level=debug msg="Successfully saved info of 1 clusters"
time="2024-12-05T17:51:01Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:01Z" level=debug msg="Successfully saved info of 1 clusters"
time="2024-12-05T17:51:21Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:21Z" level=debug msg="Successfully saved info of 1 clusters"
time="2024-12-05T17:51:41Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:41Z" level=debug msg="Successfully saved info of 1 clusters"
time="2024-12-05T17:51:48Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:48Z" level=debug msg="Cluster https://kubernetes.default.svc has not changed shard"
time="2024-12-05T17:51:48Z" level=info msg="Refreshing app status (spec.source differs), level (3)" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:48Z" level=info msg="Comparing app state (cluster: https://kubernetes.default.svc, namespace: )" application=argocd/cert-manager-crds
time="2024-12-05T17:51:48Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:48Z" level=info msg="Start syncing cluster" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ApplicationSet.argoproj.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch PersistentVolumeClaim on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch PodDisruptionBudget.policy on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch RuntimeClass.node.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch NetworkPolicy.networking.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch StorageClass.storage.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch IngressClass.networking.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch CSIDriver.storage.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch CertificateSigningRequest.certificates.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Job.batch on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ReplicationController on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch CronJob.batch on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch PodTemplate on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Ingress.networking.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ValidatingWebhookConfiguration.admissionregistration.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch LimitRange on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch CSIStorageCapacity.storage.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch HorizontalPodAutoscaler.autoscaling on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch VolumeAttachment.storage.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ResourceQuota on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch MutatingWebhookConfiguration.admissionregistration.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch PersistentVolume on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch DaemonSet.apps on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch StatefulSet.apps on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch CSINode.storage.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch AppProject.argoproj.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Application.argoproj.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Node on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch PriorityClass.scheduling.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Role.rbac.authorization.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Deployment.apps on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch RoleBinding.rbac.authorization.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch APIService.apiregistration.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch PriorityLevelConfiguration.flowcontrol.apiserver.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch FlowSchema.flowcontrol.apiserver.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch CustomResourceDefinition.apiextensions.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Service on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ConfigMap on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Namespace on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ServiceAccount on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ControllerRevision.apps on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ClusterRoleBinding.rbac.authorization.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch EndpointSlice.discovery.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ClusterRole.rbac.authorization.k8s.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Endpoints on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch ReplicaSet.apps on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Pod on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Cluster successfully synced" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=info msg="Start watch Secret on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:48Z" level=debug msg="Generating Manifest for source {https://github.com/hlastras/test-argocd-crds.git services/cert-manager/multi-file HEAD nil nil nil nil } revision HEAD"
time="2024-12-05T17:51:50Z" level=info msg="GetRepoObjs stats" application=argocd/cert-manager-crds build_options_ms=0 manifests_ms=2347 plugins_ms=0 repo_ms=0 time_ms=2348
time="2024-12-05T17:51:50Z" level=debug msg="Retrieved live manifests" application=argocd/cert-manager-crds
time="2024-12-05T17:51:50Z" level=debug msg=app.status.expired application=argocd/cert-manager-crds useDiffCache=false
time="2024-12-05T17:51:50Z" level=debug msg="Finished getting app hosts" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds iterate_resources_ms=0 process_app_pods_by_node_ms=0 project=default time_ms=0
time="2024-12-05T17:51:50Z" level=debug msg="Finished getting resource tree" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_app_hosts_ms=0 get_app_proj_ms=0 get_orphaned_resources_ms=0 process_managed_resources_ms=5 process_orphaned_resources_ms=0 project=default time_ms=5
time="2024-12-05T17:51:50Z" level=debug msg="Finished setting app managed resources" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_resource_tree_ms=5 hide_secret_data_ms=3 project=default set_app_managed_resources_ms=30 set_app_resources_tree_ms=1 time_ms=41
time="2024-12-05T17:51:50Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:50Z" level=debug msg="Skipping sharding distribution update. No relevant changes"
time="2024-12-05T17:51:50Z" level=info msg="Initiated automated sync to 'ff98591d1e0392bb4aa5fad2c5a4ad692efc5a54'" application=cert-manager-crds dest-namespace= dest-server="https://kubernetes.default.svc" reason=OperationStarted type=Normal
time="2024-12-05T17:51:50Z" level=info msg="Initiated automated sync to 'ff98591d1e0392bb4aa5fad2c5a4ad692efc5a54'" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:50Z" level=debug msg="Finished auto sync" already_attempted_check_ms=0 already_attempted_sync_ms=0 app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_applications_ms=0 project=default set_app_operation_ms=17 time_ms=44 write_back_to_informer_ms=0
time="2024-12-05T17:51:50Z" level=info msg="Updated sync status: -> OutOfSync" application=cert-manager-crds dest-namespace= dest-server="https://kubernetes.default.svc" reason=ResourceUpdated type=Normal
time="2024-12-05T17:51:50Z" level=info msg="Updated health status: -> Missing" application=cert-manager-crds dest-namespace= dest-server="https://kubernetes.default.svc" reason=ResourceUpdated type=Normal
time="2024-12-05T17:51:50Z" level=info msg="Update successful" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:50Z" level=info msg="Reconciliation completed" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds app_status_update_ms=0 application=cert-manager-crds auto_sync_ms=44 compare_app_state_ms=2387 comparison-level=3 comparison_with_nothing_ms=0 dedup_ms=0 dest-name= dest-namespace= dest-server="https://kubernetes.default.svc" diff_ms=38 git_ms=2348 health_ms=0 live_ms=0 normalize_application_ms=0 patch_ms=8 persist_app_status_ms=20 process_finalizers_ms=0 project=default refresh_app_conditions_ms=0 set_app_managed_resources_ms=41 setop_ms=17 settings_ms=0 sync_ms=0 time_ms=2494
time="2024-12-05T17:51:50Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:50Z" level=debug msg="Skipping sharding distribution update. No relevant changes"
time="2024-12-05T17:51:50Z" level=info msg="Start Update application operation state"
time="2024-12-05T17:51:50Z" level=info msg="Completed Update application operation state"
time="2024-12-05T17:51:50Z" level=info msg="updated 'argocd/cert-manager-crds' operation (phase: Running)" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:50Z" level=info msg="Initialized new operation: {&SyncOperation{Revision:ff98591d1e0392bb4aa5fad2c5a4ad692efc5a54,Prune:false,DryRun:false,SyncStrategy:nil,Resources:]SyncOperationResource{},Source:nil,Manifests:],SyncOptions:[ServerSideApply=true],Sources:]ApplicationSource{},Revisions:],SelfHealAttemptsCount:0,} { true} ] {5 nil}}" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:50Z" level=info msg="Comparing app state (cluster: https://kubernetes.default.svc, namespace: )" application=argocd/cert-manager-crds
time="2024-12-05T17:51:50Z" level=debug msg="Generating Manifest for source {https://github.com/hlastras/test-argocd-crds.git services/cert-manager/multi-file HEAD nil nil nil nil } revision ff98591d1e0392bb4aa5fad2c5a4ad692efc5a54"
time="2024-12-05T17:51:50Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:50Z" level=debug msg="Skipping sharding distribution update. No relevant changes"
time="2024-12-05T17:51:50Z" level=info msg="GetRepoObjs stats" application=argocd/cert-manager-crds build_options_ms=0 manifests_ms=67 plugins_ms=0 repo_ms=0 time_ms=67
time="2024-12-05T17:51:50Z" level=debug msg="Retrieved live manifests" application=argocd/cert-manager-crds
time="2024-12-05T17:51:50Z" level=debug msg="using diff cache" application=argocd/cert-manager-crds useDiffCache=true
time="2024-12-05T17:51:50Z" level=info msg=Syncing application=argocd/cert-manager-crds skipHooks=false started=false syncId=00001-dbUpA
time="2024-12-05T17:51:50Z" level=info msg="Tasks from managed resources" application=argocd/cert-manager-crds resourceTasks="[Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/clusterissuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/issuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/orders.acme.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificaterequests.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificates.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/challenges.acme.cert-manager.io nil->obj (,,)]" syncId=00001-dbUpA
time="2024-12-05T17:51:50Z" level=info msg="tasks from hooks" application=argocd/cert-manager-crds hookTasks="]" syncId=00001-dbUpA
time="2024-12-05T17:51:50Z" level=info msg="Tasks (dry-run)" application=argocd/cert-manager-crds syncId=00001-dbUpA tasks="[Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificaterequests.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificates.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/challenges.acme.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/clusterissuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/issuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/orders.acme.cert-manager.io nil->obj (,,)]"
time="2024-12-05T17:51:50Z" level=info msg="Running tasks" application=argocd/cert-manager-crds dryRun=true numTasks=6 syncId=00001-dbUpA
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=true syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificaterequests.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/certificaterequests.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=client manager=argocd-controller serverSideApply=false serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=true syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/clusterissuers.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/clusterissuers.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=client manager=argocd-controller serverSideApply=false serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=true syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificates.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/certificates.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=client manager=argocd-controller serverSideApply=false serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=true syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/challenges.acme.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/challenges.acme.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=client manager=argocd-controller serverSideApply=false serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=true syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/issuers.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/issuers.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=client manager=argocd-controller serverSideApply=false serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=true syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/orders.acme.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/orders.acme.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=client manager=argocd-controller serverSideApply=false serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg="Filtering out non-pending tasks" application=argocd/cert-manager-crds syncId=00001-dbUpA tasks="[Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificaterequests.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificates.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/challenges.acme.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/clusterissuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/issuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/orders.acme.cert-manager.io nil->obj (,,)]"
time="2024-12-05T17:51:50Z" level=info msg="Filtering tasks in correct phase and wave" application=argocd/cert-manager-crds phase=Sync syncFailTasks="]" syncId=00001-dbUpA tasks="[Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificaterequests.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificates.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/challenges.acme.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/clusterissuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/issuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/orders.acme.cert-manager.io nil->obj (,,)]" wave=0
time="2024-12-05T17:51:50Z" level=info msg="Updating operation state. phase: Running -> Running, message: '' -> 'one or more tasks are running'" application=argocd/cert-manager-crds syncId=00001-dbUpA
time="2024-12-05T17:51:50Z" level=info msg=Wet-run application=argocd/cert-manager-crds syncId=00001-dbUpA tasks="[Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificaterequests.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificates.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/challenges.acme.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/clusterissuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/issuers.cert-manager.io nil->obj (,,), Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/orders.acme.cert-manager.io nil->obj (,,)]"
time="2024-12-05T17:51:50Z" level=info msg="Running tasks" application=argocd/cert-manager-crds dryRun=false numTasks=6 syncId=00001-dbUpA
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=false syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificaterequests.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/certificaterequests.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=none manager=argocd-controller serverSideApply=true serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=false syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/clusterissuers.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=false syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/orders.acme.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/orders.acme.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=none manager=argocd-controller serverSideApply=true serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/clusterissuers.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=none manager=argocd-controller serverSideApply=true serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=false syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/certificates.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=false syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/challenges.acme.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg=Applying application=argocd/cert-manager-crds dryRun=false syncId=00001-dbUpA task="Sync/0 resource apiextensions.k8s.io/CustomResourceDefinition:/issuers.cert-manager.io nil->obj (,,)"
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/certificates.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=none manager=argocd-controller serverSideApply=true serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/challenges.acme.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=none manager=argocd-controller serverSideApply=true serverSideDiff=false
time="2024-12-05T17:51:50Z" level=info msg="Applying resource CustomResourceDefinition/issuers.cert-manager.io in cluster: https://10.96.0.1:443, namespace: " dry-run=none manager=argocd-controller serverSideApply=true serverSideDiff=false
time="2024-12-05T17:51:51Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=ADDED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:51Z" level=info msg="Adding resource result, status: 'Synced', phase: 'Running', message: 'customresourcedefinition.apiextensions.k8s.io/certificaterequests.cert-manager.io serverside-applied'" application=argocd/cert-manager-crds kind=CustomResourceDefinition name=certificaterequests.cert-manager.io namespace= phase=Sync syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="Adding resource result, status: 'Synced', phase: 'Running', message: 'customresourcedefinition.apiextensions.k8s.io/orders.acme.cert-manager.io serverside-applied'" application=argocd/cert-manager-crds kind=CustomResourceDefinition name=orders.acme.cert-manager.io namespace= phase=Sync syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="Adding resource result, status: 'Synced', phase: 'Running', message: 'customresourcedefinition.apiextensions.k8s.io/certificates.cert-manager.io serverside-applied'" application=argocd/cert-manager-crds kind=CustomResourceDefinition name=certificates.cert-manager.io namespace= phase=Sync syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="Adding resource result, status: 'Synced', phase: 'Running', message: 'customresourcedefinition.apiextensions.k8s.io/issuers.cert-manager.io serverside-applied'" application=argocd/cert-manager-crds kind=CustomResourceDefinition name=issuers.cert-manager.io namespace= phase=Sync syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=ADDED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:51Z" level=info msg="Start watch Order.acme.cert-manager.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:51Z" level=info msg="Start watch CertificateRequest.cert-manager.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:51Z" level=info msg="Start watch Certificate.cert-manager.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:51Z" level=info msg="Adding resource result, status: 'Synced', phase: 'Running', message: 'customresourcedefinition.apiextensions.k8s.io/challenges.acme.cert-manager.io serverside-applied'" application=argocd/cert-manager-crds kind=CustomResourceDefinition name=challenges.acme.cert-manager.io namespace= phase=Sync syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="Start watch Issuer.cert-manager.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:51Z" level=info msg="Adding resource result, status: 'Synced', phase: 'Running', message: 'customresourcedefinition.apiextensions.k8s.io/clusterissuers.cert-manager.io serverside-applied'" application=argocd/cert-manager-crds kind=CustomResourceDefinition name=clusterissuers.cert-manager.io namespace= phase=Sync syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="Updating operation state. phase: Running -> Succeeded, message: 'one or more tasks are running' -> 'successfully synced (all tasks run)'" application=argocd/cert-manager-crds syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="sync/terminate complete" application=argocd/cert-manager-crds duration=1.063998386s syncId=00001-dbUpA
time="2024-12-05T17:51:51Z" level=info msg="Start Update application operation state"
time="2024-12-05T17:51:51Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:51Z" level=debug msg="Skipping sharding distribution update. No relevant changes"
time="2024-12-05T17:51:51Z" level=info msg="Completed Update application operation state"
time="2024-12-05T17:51:51Z" level=info msg="updated 'argocd/cert-manager-crds' operation (phase: Succeeded)" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:51Z" level=info msg="Sync operation to ff98591d1e0392bb4aa5fad2c5a4ad692efc5a54 succeeded" application=cert-manager-crds dest-namespace= dest-server="https://kubernetes.default.svc" reason=OperationCompleted type=Normal
time="2024-12-05T17:51:51Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:51Z" level=debug msg="Skipping sharding distribution update. No relevant changes"
time="2024-12-05T17:51:51Z" level=debug msg="Finished processing requested app operation" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds final_set_operation_state=20 get_app_proj_ms=0 initial_operation_stage_ms=10 project=default request_app_refresh_ms=0 time_ms=1175 validate_and_sync_app_state_ms=1144
time="2024-12-05T17:51:51Z" level=debug msg="Finished processing app operation queue item" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_fresh_app_ms=6 process_requested_app_operation_ms=1175 project=default time_ms=1181
time="2024-12-05T17:51:51Z" level=debug msg="Finished processing app operation queue item" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_fresh_app_ms=0 project=default time_ms=0
time="2024-12-05T17:51:51Z" level=info msg="Refreshing app status (controller refresh requested), level (3)" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:51Z" level=info msg="Comparing app state (cluster: https://kubernetes.default.svc, namespace: )" application=argocd/cert-manager-crds
time="2024-12-05T17:51:51Z" level=debug msg="Generating Manifest for source {https://github.com/hlastras/test-argocd-crds.git services/cert-manager/multi-file HEAD nil nil nil nil } revision HEAD"
time="2024-12-05T17:51:52Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=ADDED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:52Z" level=info msg="Start watch Challenge.acme.cert-manager.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:52Z" level=info msg="Start watch ClusterIssuer.cert-manager.io on https://10.96.0.1:443" server="https://kubernetes.default.svc"
time="2024-12-05T17:51:52Z" level=info msg="GetRepoObjs stats" application=argocd/cert-manager-crds build_options_ms=0 manifests_ms=525 plugins_ms=0 repo_ms=0 time_ms=525
time="2024-12-05T17:51:52Z" level=debug msg="Retrieved live manifests" application=argocd/cert-manager-crds
time="2024-12-05T17:51:52Z" level=debug msg="using diff cache" application=argocd/cert-manager-crds useDiffCache=true
time="2024-12-05T17:51:52Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:52Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:52Z" level=debug msg="Finished getting app hosts" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds iterate_resources_ms=3 process_app_pods_by_node_ms=0 project=default time_ms=3
time="2024-12-05T17:51:52Z" level=debug msg="Finished getting resource tree" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_app_hosts_ms=3 get_app_proj_ms=0 get_orphaned_resources_ms=0 process_managed_resources_ms=12 process_orphaned_resources_ms=0 project=default time_ms=16
time="2024-12-05T17:51:52Z" level=debug msg="Finished setting app managed resources" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_resource_tree_ms=16 hide_secret_data_ms=4 project=default set_app_managed_resources_ms=27 set_app_resources_tree_ms=1 time_ms=48
time="2024-12-05T17:51:52Z" level=info msg="Executing compare of syncResult.Revision and commitSha because manifest changed: ff98591d1e0392bb4aa5fad2c5a4ad692efc5a54" application=cert-manager-crds
time="2024-12-05T17:51:52Z" level=info msg="Skipping auto-sync: most recent sync already to ff98591d1e0392bb4aa5fad2c5a4ad692efc5a54" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:52Z" level=debug msg="Finished auto sync" already_attempted_sync_ms=0 app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default time_ms=0
time="2024-12-05T17:51:52Z" level=info msg="Update successful" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds project=default
time="2024-12-05T17:51:52Z" level=info msg="Reconciliation completed" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds app_status_update_ms=0 application=cert-manager-crds auto_sync_ms=0 compare_app_state_ms=959 comparison-level=3 comparison_with_nothing_ms=0 dedup_ms=0 dest-name= dest-namespace= dest-server="https://kubernetes.default.svc" diff_ms=62 git_ms=525 health_ms=0 live_ms=370 normalize_application_ms=1 patch_ms=11 persist_app_status_ms=11 process_finalizers_ms=0 project=default refresh_app_conditions_ms=0 set_app_managed_resources_ms=48 setop_ms=0 settings_ms=0 sync_ms=0 time_ms=1021
time="2024-12-05T17:51:52Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:51:52Z" level=debug msg="Skipping sharding distribution update. No relevant changes"
time="2024-12-05T17:51:52Z" level=debug msg="Finished processing app operation queue item" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_fresh_app_ms=0 project=default time_ms=0
time="2024-12-05T17:51:52Z" level=debug msg="Finished processing app operation queue item" app-namespace=argocd app-qualified-name=argocd/cert-manager-crds application=cert-manager-crds get_fresh_app_ms=0 project=default time_ms=0
time="2024-12-05T17:51:52Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:52Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=ADDED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=ADDED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=ADDED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:53Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:51:54Z" level=info msg="Updating Kubernetes APIs, watches, and Open API schemas due to CRD event" eventType=MODIFIED groupKind=CustomResourceDefinition.apiextensions.k8s.io server="https://kubernetes.default.svc"
time="2024-12-05T17:52:01Z" level=debug msg="Checking if cluster https://kubernetes.default.svc with clusterShard 0 should be processed by shard 0"
time="2024-12-05T17:52:01Z" level=debug msg="Successfully saved info of 1 clusters"
```

**Extra context**

We experience this issue when creating new clusters and need to deploy a set of applications at the beginning. We always have to resolve this manually.
Our ArgoCD setup is more complex (with many non-default configurations). Additionally, our Applications are more advanced, and we use different SyncOptions. However, testing this, I found that even when removing all our customizations and simplifying it as much as possible, the issue still occurs.

Looking at the logs, I would say that the resources marked as OutOfSync are actually shown as deployed in the logs:
```
level=info msg="Adding resource result, status: 'Synced', phase: 'Running', message: 'customresourcedefinition.apiextensions.k8s.io/challenges.acme.cert-manager.io serverside-applied'" application=argocd/cert-manager-crds kind=CustomResourceDefinition name=challenges.acme.cert-manager.io namespace= phase=Sync syncId=00001-dbUpA
```
Maybe I'm mistaken on that log.

Reproduce the issue with the provided kind create cluster command, Helm installation, and cert-manager-crds Application manifest. Start with the application-controller debug logs while deploying multiple CRDs, then compare the reported resource state before and after a manual refresh or the three-minute resync. Done means successfully deployed CRDs leave the Application Healthy and Synced without manual synchronization.

Written by the indexing model from the issue text.