Deprecated permissions are not deleted after upgrade

### Bug description

I reopen an issue about deprecated permissions not deleted after upgrade
(previous issue : https://github.com/apache/superset/issues/29504)

Hello
after upgrade, deprecated permissions are not deleted.

I use a docker container.
At every step, I do :
- Run a container, with persistant volume for the database (/app/superset_home) and config (/app/pythonpath)
- Execute 'superset db upgrade'
- Execute 'superset init'

I tried a migration from 1.5.2 to 5.0.0-RC2 directly or by steps (1.5.2 --> 2.0.0 --> 3.0.0 --> 4.0.2 --> 5.0.0-rc2)
For the example, we focus on 'can select star on Superset'

| Version | Permissions count | 'can select star on Superset' |
| --- | --- | --- |
| 1.5.2 | 249 | Present |
| 2.0.0 | 194 | Not present |
| 3.0.0 | 169 | Not present |
| 4.0.2 | 167 | Not present |
| 5.0.0-RC2 | 160 | Not present |

With direct or steps migration, permission count is always increase

| Version | Permissions count | 'can select star on Superset' |
| --- | --- | --- |
| 1.5.2 | 249 | Present |
| ↳ 2.0.0 | 251 | Present |
| ↳ 3.0.0 | 276 | Present |
| ↳ 4.0.2 | 282 | Present |
| ↳ 5.0.0-RC2 | 291 | Present |

| Version | Permissions count | 'can select star on Superset' |
| --- | --- | --- |
| 1.5.2 | 249 | Present |
| ↳ 5.0.0-RC2 | 286 | Present |

In #29504, permissions_cleanup.py is mentionned by dosu but this script is not present in docker container
How can I clean deprecated permissions for my container ?

Best regards

### Screenshots/recordings

_No response_

### Superset version

master / latest-dev

### Python version

3.9

### Node version

16

### Browser

Chrome

### Additional context

_No response_

### Checklist

- [x] I have searched Superset docs and Slack and didn't find a solution to my problem.
- [x] I have searched the GitHub issue tracker and didn't find a similar bug report.
- [x] I have checked Superset's logs for errors and if I found a relevant Python stacktrace, I included it here as text in the "additional context" section.

Start by reproducing the upgrade with `superset db upgrade` followed by `superset init`, then read the referenced `permissions_cleanup.py` discussion and the migration entry points involved. Done means deprecated permissions such as `can select star on Superset` are removed after the upgrade without increasing permission counts unexpectedly.

Written by the indexing model from the issue text.