Gradle stores some settings into .gradle which are later marked by MS Java Ext pack as modified project

### Apache NetBeans version

Apache NetBeans 17 release candidate

### What happened

Created Gradle project with subprojects using VSNetBeans 16.0.301 and OCI tooling. This is done in coexistence with MS Java Ext Pack (JDT). Later MS Java reports as problem that Gradle project files was modified and needs to be reloaded to make it effective. It looks like some recent change or regression on NBLS side.

It is not shown when project is open for 2nd time, just after its creation when OCI powered Vulnerabilities audit completes.
Using VSNetBeans 16.0.301

### How to reproduce

_No response_

### Did this work correctly in an earlier version?

Apache NetBeans 15

### Operating System

macOS

### JDK

GraalVM 22.3.0 JDK17

### Apache NetBeans packaging

Apache VSNetBeans for VSCode

### Anything else

_No response_

### Are you willing to submit a pull request?

Yes

### Code of Conduct

Yes