org.apache.jena.fuseki.servlets.ActionErrorException: Cannot read field "succ" because "n" is null
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Description
### Version
5.0.0
### What happened?
# Steps to Reproduce
1. Create a new dataset via `curl -X POST 'http://localhost:3030/$/datasets' --upload-file ./dsConfigTemplate.ttl --header "Content-Type: text/turtle"` where `dsConfigTemplate.ttl` is:
```
# https://apothem.blog/apache-jena-fuseki-adding-reasoning-and-full-text-search-capabilities-to-a-dataset.html
PREFIX :
PREFIX fuseki:
PREFIX ja:
PREFIX rdf:
PREFIX rdfs:
PREFIX tdb2:
:tdb_dataset_readwrite
rdf:type tdb2:DatasetTDB2;
tdb2:location "/fuseki/databases/ds" . # <-- Change ds to the name of the datastore
:service_tdb_all rdf:type fuseki:Service;
rdfs:label "TDB2 ds";
fuseki:dataset :dataset ;
fuseki:endpoint [ fuseki:name "get";
fuseki:operation fuseki:gsp-r
];
fuseki:endpoint [ fuseki:operation fuseki:gsp-rw ];
fuseki:endpoint [ fuseki:operation fuseki:update ];
fuseki:endpoint [ fuseki:name "update";
fuseki:operation fuseki:update
];
fuseki:endpoint [ fuseki:name "sparql";
fuseki:operation fuseki:query
];
fuseki:endpoint [ fuseki:operation fuseki:query ];
fuseki:endpoint [ fuseki:name "data";
fuseki:operation fuseki:gsp-rw
];
fuseki:endpoint [ fuseki:name "query";
fuseki:operation fuseki:query
];
fuseki:name "ds" . # <-- Change ds to the name of the datastore
:dataset a ja:RDFDataset ;
ja:defaultGraph :model_inf .
:model_inf a ja:InfModel ;
ja:baseModel :graph ;
ja:reasoner [
ja:reasonerURL
] .
:graph rdf:type tdb2:GraphTDB ;
tdb2:dataset :tdb_dataset_readwrite ;
.
```
2. Via the web interface's edit tab, replace all the triples in the default graph with:
```
PREFIX rdf:
PREFIX rdfs:
rdfs:range rdf:type rdf:Property , rdfs:Resource;
rdfs:comment "A range of the subject property.";
rdfs:domain rdf:Property;
rdfs:isDefinedBy rdfs:;
rdfs:label "range";
rdfs:range rdfs:Class;
rdfs:seeAlso rdfs:;
rdfs:subPropertyOf rdfs:range .
rdfs:subPropertyOf rdf:type rdf:Property , rdfs:Resource;
rdfs:comment "The subject is a subproperty of a property.";
rdfs:domain rdf:Property;
rdfs:isDefinedBy rdfs:;
rdfs:label "subPropertyOf";
rdfs:range rdf:Property;
rdfs:seeAlso rdfs:;
rdfs:subPropertyOf rdfs:subPropertyOf .
```
3. In the query tab of the web interface, change the `query` endpoint to `update` and run this query:
```
DELETE {?s ?p ?o} WHERE { VALUES ?s{ }
?s ?p ?o .
}
```
4. Observe Error `Cannot read field "succ" because "n" is null`
### Relevant output and stacktrace
```shell
org.apache.jena.fuseki.servlets.ActionErrorException: Cannot read field "succ" because "n" is null
at org.apache.jena.fuseki.servlets.ServletOps.errorOccurred(ServletOps.java:275) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.SPARQL_Update.execute(SPARQL_Update.java:259) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.SPARQL_Update.executeBody(SPARQL_Update.java:191) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.SPARQL_Update.execute(SPARQL_Update.java:106) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.ActionService.executeLifecycle(ActionService.java:58) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.SPARQL_Update.execPost(SPARQL_Update.java:91) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.ActionProcessor.process(ActionProcessor.java:34) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.ActionBase.process(ActionBase.java:54) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.ActionExecLib.execActionSub(ActionExecLib.java:127) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.ActionExecLib.execAction(ActionExecLib.java:101) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.server.Dispatcher.dispatchAction(Dispatcher.java:240) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.server.Dispatcher.process(Dispatcher.java:230) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.server.Dispatcher.dispatch(Dispatcher.java:148) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.FusekiFilter.doFilter(FusekiFilter.java:49) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.FilterHolder.doFilter(FilterHolder.java:205) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1586) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:65) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:109) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:138) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:156) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:70) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.AdviceFilter.executeChain(AdviceFilter.java:109) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.AdviceFilter.doFilterInternal(AdviceFilter.java:138) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:156) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.ProxiedFilterChain.doFilter(ProxiedFilterChain.java:70) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.AbstractShiroFilter.executeChain(AbstractShiroFilter.java:463) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.AbstractShiroFilter.lambda$doFilterInternal$0(AbstractShiroFilter.java:378) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.subject.support.SubjectCallable.doCall(SubjectCallable.java:91) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.subject.support.SubjectCallable.call(SubjectCallable.java:84) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.subject.support.DelegatingSubject.execute(DelegatingSubject.java:389) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.AbstractShiroFilter.doFilterInternal(AbstractShiroFilter.java:376) ~[fuseki-server.jar:5.0.0]
at org.apache.shiro.web.servlet.OncePerRequestFilter.doFilter(OncePerRequestFilter.java:156) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.FilterHolder.doFilter(FilterHolder.java:205) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1586) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.CrossOriginFilter.handle(CrossOriginFilter.java:348) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.CrossOriginFilter.doFilter(CrossOriginFilter.java:301) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.FilterHolder.doFilter(FilterHolder.java:208) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.ServletHandler$Chain.doFilter(ServletHandler.java:1586) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.ServletHandler$MappedServlet.handle(ServletHandler.java:1547) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.ServletChannel.dispatch(ServletChannel.java:814) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.ServletChannel.handle(ServletChannel.java:431) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.ServletHandler.handle(ServletHandler.java:464) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:571) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.ee10.servlet.SessionHandler.handle(SessionHandler.java:703) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.server.handler.ContextHandler.handle(ContextHandler.java:765) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.server.handler.gzip.GzipHandler.handle(GzipHandler.java:597) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.server.Server.handle(Server.java:179) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.server.internal.HttpChannelState$HandlerInvoker.run(HttpChannelState.java:619) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.server.internal.HttpConnection.onFillable(HttpConnection.java:411) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.io.AbstractConnection$ReadCallback.succeeded(AbstractConnection.java:322) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.io.FillInterest.fillable(FillInterest.java:99) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.io.SelectableChannelEndPoint$1.run(SelectableChannelEndPoint.java:53) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.strategy.AdaptiveExecutionStrategy.runTask(AdaptiveExecutionStrategy.java:478) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.strategy.AdaptiveExecutionStrategy.consumeTask(AdaptiveExecutionStrategy.java:441) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.strategy.AdaptiveExecutionStrategy.tryProduce(AdaptiveExecutionStrategy.java:293) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.strategy.AdaptiveExecutionStrategy.run(AdaptiveExecutionStrategy.java:201) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.ReservedThreadExecutor$ReservedThread.run(ReservedThreadExecutor.java:410) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:971) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.doRunJob(QueuedThreadPool.java:1201) ~[fuseki-server.jar:5.0.0]
at org.eclipse.jetty.util.thread.QueuedThreadPool$Runner.run(QueuedThreadPool.java:1156) ~[fuseki-server.jar:5.0.0]
at java.base/java.lang.Thread.run(Unknown Source) [?:?]
Caused by: java.lang.NullPointerException: Cannot read field "succ" because "n" is null
at org.apache.jena.reasoner.transitiveReasoner.TransitiveGraphCache.processDeletes(TransitiveGraphCache.java:439) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.reasoner.transitiveReasoner.TransitiveGraphCache.find(TransitiveGraphCache.java:546) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.reasoner.transitiveReasoner.TransitiveEngine.cacheSubPropUtility(TransitiveEngine.java:385) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.reasoner.transitiveReasoner.TransitiveEngine.delete(TransitiveEngine.java:276) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.reasoner.rulesys.FBRuleInfGraph.performDelete(FBRuleInfGraph.java:658) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.graph.impl.GraphBase.delete(GraphBase.java:181) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.core.DatasetGraphCollection.delete(DatasetGraphCollection.java:53) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateEngineWorker.deleteFromDatasetGrap
14:14:38.180 › Fuseki: h(UpdateEngineWorker.java:506) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateEngineWorker.lambda$execDelete$8(UpdateEngineWorker.java:474) ~[fuseki-server.jar:5.0.0]
at java.base/java.util.ArrayList$Itr.forEachRemaining(Unknown Source) ~[?:?]
at org.apache.jena.atlas.iterator.IteratorFlatMap.lambda$forEachRemaining$0(IteratorFlatMap.java:94) ~[fuseki-server.jar:5.0.0]
at java.base/java.util.ArrayList$Itr.forEachRemaining(Unknown Source) ~[?:?]
at org.apache.jena.atlas.iterator.IteratorFlatMap.forEachRemaining(IteratorFlatMap.java:90) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateEngineWorker.execDelete(UpdateEngineWorker.java:474) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateEngineWorker.execDelete(UpdateEngineWorker.java:463) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateEngineWorker.visit(UpdateEngineWorker.java:384) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.request.UpdateModify.visit(UpdateModify.java:100) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateVisitorSink.send(UpdateVisitorSink.java:45) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateVisitorSink.send(UpdateVisitorSink.java:31) ~[fuseki-server.jar:5.0.0]
at java.base/java.util.ArrayList$Itr.forEachRemaining(Unknown Source) ~[?:?]
at java.base/java.util.Collections$UnmodifiableCollection$1.forEachRemaining(Unknown Source) ~[?:?]
at org.apache.jena.atlas.iterator.Iter.sendToSink(Iter.java:776) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.modify.UpdateProcessorBase.execute(UpdateProcessorBase.java:60) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.sparql.exec.UpdateExecDataset.execute(UpdateExecDataset.java:37) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.update.UpdateAction.execute$(UpdateAction.java:230) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.update.UpdateAction.execute(UpdateAction.java:195) ~[fuseki-server.jar:5.0.0]
at org.apache.jena.fuseki.servlets.SPARQL_Update.execute(SPARQL_Update.java:231) ~[fuseki-server.jar:5.0.0]
... 59 more
[2024-08-01 14:14:38] Fuseki INFO [304] 500 Server Error (207 ms)
```
### Are you interested in making a pull request?
No
Contributor guide
Research direction
Reproduce the failure with the dataset configuration and DELETE query described in the issue, then start at org.apache.jena.reasoner.transitiveReasoner.TransitiveGraphCache.processDeletes in TransitiveGraphCache.java:439 and follow its callers through TransitiveEngine.delete. Add coverage for this deletion scenario and verify that it completes without the NullPointerException.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- backend
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100